Index

A | B | C | D | E | F | G | H | I | J | K | L | M | N | P | Q | R | S | T | U | V | W | X | Y

A

add_element() (yatel.db.YatelNetwork method)
add_elements() (yatel.db.YatelNetwork method)
add_nw() (yatel.server.YatelHttpServer method)
amax() (in module yatel.qbj.functions)
(in module yatel.stats)
amin() (in module yatel.qbj.functions)
(in module yatel.stats)
average() (in module yatel.qbj.functions)
(in module yatel.stats)

B

Backup (class in yatel.cli)
BaseETL (class in yatel.etl)
BaseParser (class in yatel.yio.core)
BaseWeight (class in yatel.weight.core)

C

capitalize() (in module yatel.qbj.functions)
command() (in module yatel.cli)
CONF_SCHEMA (in module yatel.server)
confirm_changes() (yatel.db.YatelNetwork method)
Copy (class in yatel.cli)
copy() (in module yatel.db)
count() (in module yatel.qbj.functions)
CreateConf (class in yatel.cli)
CreateETL (class in yatel.cli)
CreateWSGI (class in yatel.cli)

D

DamerauLevenshtein (class in yatel.weight.levenshtein)
Database (class in yatel.cli)
default() (yatel.qbj.shell.QBJShell method)
DEFINITIONS (in module yatel.qbj.schema)
Describe (class in yatel.cli)
describe() (in module yatel.qbj.functions)
(yatel.db.YatelNetwork method)
DescribeETL (class in yatel.cli)
Descriptor (class in yatel.dom)
div() (in module yatel.qbj.functions)
do_EOF() (yatel.qbj.shell.QBJShell method)
do_exec() (yatel.qbj.shell.QBJShell method)
do_exit() (yatel.qbj.shell.QBJShell method)
do_fhelp() (yatel.qbj.shell.QBJShell method)
do_help() (yatel.qbj.shell.QBJShell method)
do_indent() (yatel.qbj.shell.QBJShell method)
Dump (class in yatel.cli)
dump() (in module yatel.yio)
(yatel.yio.core.BaseParser method)
(yatel.yio.yjf.JSONParser method)
(yatel.yio.yxf.XMLParser method)
dumps() (yatel.yio.core.BaseParser method)

E

Edge (class in yatel.dom)
edge_gen() (yatel.etl.BaseETL method)
EDGES (in module yatel.db)
edges() (in module yatel.qbj.functions)
(yatel.db.YatelNetwork method)
edges_by_environment() (in module yatel.qbj.functions)
(yatel.db.YatelNetwork method)
edges_by_haplotype() (in module yatel.qbj.functions)
(yatel.db.YatelNetwork method)
emptyline() (yatel.qbj.shell.QBJShell method)
endswith() (in module yatel.qbj.functions)
ENGINE_URIS (in module yatel.db)
ENGINE_VARS (in module yatel.db)
ENGINES (in module yatel.db)
env2weightarray() (in module yatel.qbj.functions)
(in module yatel.stats)
Environment (class in yatel.dom)
environments() (in module yatel.qbj.functions)
(yatel.db.YatelNetwork method)
error (yatel.client.QBJResponse attribute)
error_msg (yatel.client.QBJResponse attribute)
etlcls_from_module() (in module yatel.etl)
Euclidean (class in yatel.weight.euclidean)
execute() (in module yatel.etl)
(yatel.client.QBJClient method)
(yatel.db.YatelNetwork method)
(yatel.qbj.core.QBJEngine method)
exists() (in module yatel.db)

F

Fact (class in yatel.dom)
fact_gen() (yatel.etl.BaseETL method)
FACTS (in module yatel.db)
facts() (in module yatel.qbj.functions)
(yatel.db.YatelNetwork method)
facts_by_environment() (in module yatel.qbj.functions)
(yatel.db.YatelNetwork method)
facts_by_haplotype() (in module yatel.qbj.functions)
(yatel.db.YatelNetwork method)
file_exts() (yatel.yio.core.BaseParser class method)
(yatel.yio.yjf.JSONParser class method)
(yatel.yio.yxf.XMLParser class method)
find() (in module yatel.qbj.functions)
floor() (in module yatel.qbj.functions)
from_dict() (in module yatel.server)

G

get_conf_template() (in module yatel.server)
get_template() (in module yatel.etl)
get_wsgi_template() (in module yatel.server)

H

Hamming (class in yatel.weight.hamming)
hap_in_env_coords() (in module yatel.cluster.kmeans)
Haplotype (class in yatel.dom)
haplotype_by_id() (in module yatel.qbj.functions)
(yatel.db.YatelNetwork method)
haplotype_gen() (yatel.etl.BaseETL method)
HAPLOTYPES (in module yatel.db)
haplotypes() (in module yatel.qbj.functions)
(yatel.db.YatelNetwork method)
haplotypes_by_environment() (in module yatel.qbj.functions)
(yatel.db.YatelNetwork method)
HAPLOTYPES_CACHE (yatel.etl.BaseETL attribute)
HASHED_TYPES (in module yatel.typeconv)
help() (in module yatel.qbj.functions)

I

id (yatel.client.QBJResponse attribute)
index() (in module yatel.qbj.functions)
isalnum() (in module yatel.qbj.functions)
isalpha() (in module yatel.qbj.functions)
isdigit() (in module yatel.qbj.functions)
islower() (in module yatel.qbj.functions)
isspace() (in module yatel.qbj.functions)
istitle() (in module yatel.qbj.functions)
isupper() (in module yatel.qbj.functions)

J

join() (in module yatel.qbj.functions)
json (yatel.client.QBJResponse attribute)
JSONParser (class in yatel.yio.yjf)

K

kmeans() (in module yatel.cluster.kmeans)
(in module yatel.qbj.functions)
kurtosis() (in module yatel.qbj.functions)
(in module yatel.stats)

L

Levenshtein (class in yatel.weight.levenshtein)
List (class in yatel.cli)
LITERAL_TYPE (in module yatel.typeconv)
Load (class in yatel.cli)
load() (in module yatel.yio)
(yatel.yio.core.BaseParser method)
(yatel.yio.yjf.JSONParser method)
(yatel.yio.yxf.XMLParser method)
loads() (yatel.yio.core.BaseParser method)
lower() (in module yatel.qbj.functions)
lstrip() (in module yatel.qbj.functions)

M

max() (in module yatel.qbj.functions)
(in module yatel.stats)
median() (in module yatel.qbj.functions)
(in module yatel.stats)
min() (in module yatel.qbj.functions)
(in module yatel.stats)
minus() (in module yatel.qbj.functions)
mode (yatel.db.YatelNetwork attribute)
mode() (in module yatel.qbj.functions)
(in module yatel.stats)
MODE_APPEND (in module yatel.db)
MODE_READ (in module yatel.db)
MODE_WRITE (in module yatel.db)
MODES (in module yatel.db)

N

names() (yatel.weight.core.BaseWeight class method)
(yatel.weight.euclidean.Euclidean class method)
(yatel.weight.hamming.Hamming class method)
(yatel.weight.levenshtein.DamerauLevenshtein class method)
(yatel.weight.levenshtein.Levenshtein class method)
NAMES_TO_TYPES (in module yatel.typeconv)
now() (in module yatel.qbj.functions)
np2py() (in module yatel.typeconv)
nw() (yatel.server.YatelHttpServer method)
nw2obs() (in module yatel.cluster.kmeans)

P

parse() (in module yatel.typeconv)
parse_response() (yatel.client.QBJClient method)
parse_uri() (in module yatel.db)
PARSERS (in module yatel.yio)
percentile() (in module yatel.qbj.functions)
(in module yatel.stats)
ping() (in module yatel.qbj.functions)
pow() (in module yatel.qbj.functions)
PyShell (class in yatel.cli)
PYTHON_TYPES (in module yatel.db)

Q

qbj() (yatel.server.YatelHttpServer method)
QBJ_SCHEMA (in module yatel.qbj.schema)
QBJClient (class in yatel.client)
QBJClientError
QBJEngine (class in yatel.qbj.core)
QBJResolver (class in yatel.qbj.core)
QBJResponse (class in yatel.client)
QBJShell (class in yatel.cli)
(class in yatel.qbj.shell)
qfilter() (in module yatel.db)

R

range() (in module yatel.qbj.functions)
(in module yatel.stats)
replace() (in module yatel.qbj.functions)
resolve() (yatel.qbj.core.QBJResolver method)
response (yatel.client.QBJResponse attribute)
rfind() (in module yatel.qbj.functions)
rsplit() (in module yatel.qbj.functions)
rstrip() (in module yatel.qbj.functions)
RunETL (class in yatel.cli)
Runserver (class in yatel.cli)

S

scan_dir() (in module yatel.etl)
scan_file() (in module yatel.etl)
simplifier() (in module yatel.typeconv)
size() (in module yatel.qbj.functions)
slice() (in module yatel.qbj.functions)
sort() (in module yatel.qbj.functions)
split() (in module yatel.qbj.functions)
SQL_ALCHEMY_TYPES (in module yatel.db)
stack_trace (yatel.client.QBJResponse attribute)
startswith() (in module yatel.qbj.functions)
std() (in module yatel.qbj.functions)
(in module yatel.stats)
strip() (in module yatel.qbj.functions)
sum() (in module yatel.qbj.functions)
(in module yatel.stats)
swapcase() (in module yatel.qbj.functions)
SYNONYMS (in module yatel.yio)

T

TABLES (in module yatel.db)
Test (class in yatel.cli)
time() (in module yatel.qbj.functions)
times() (in module yatel.qbj.functions)
title() (in module yatel.qbj.functions)
to_num_default() (in module yatel.weight.euclidean)
TO_PYTHON_TYPES (in module yatel.typeconv)
to_seq_default() (in module yatel.weight.levenshtein)
TO_SIMPLE_TYPES (in module yatel.typeconv)
to_uri() (in module yatel.db)
today() (in module yatel.qbj.functions)
TYPES_TO_NAMES (in module yatel.typeconv)

U

upper() (in module yatel.qbj.functions)
uri (yatel.db.YatelNetwork attribute)
utcnow() (in module yatel.qbj.functions)
utctime() (in module yatel.qbj.functions)
utctoday() (in module yatel.qbj.functions)

V

validate() (in module yatel.qbj.schema)
validate_conf() (in module yatel.server)
validate_read() (yatel.db.YatelNetwork method)
var() (in module yatel.qbj.functions)
(in module yatel.stats)
variation() (in module yatel.qbj.functions)
(in module yatel.stats)
Version (class in yatel.cli)
version() (yatel.yio.core.BaseParser class method)

W

weight() (in module yatel.weight)
(yatel.weight.core.BaseWeight method)
(yatel.weight.euclidean.Euclidean method)
(yatel.weight.hamming.Hamming method)
(yatel.weight.levenshtein.DamerauLevenshtein method)
(yatel.weight.levenshtein.Levenshtein method)
weights() (in module yatel.weight)
(yatel.weight.core.BaseWeight method)
weights2array() (in module yatel.stats)
WSGI_BASE_TPL (in module yatel.server)

X

XMLParser (class in yatel.yio.yxf)
xroot() (in module yatel.qbj.functions)

Y

yatel (module)
(yatel.client.QBJResponse attribute)
yatel.cli (module)
yatel.client (module)
yatel.cluster (module)
yatel.cluster.kmeans (module)
yatel.db (module)
yatel.dom (module)
yatel.etl (module)
yatel.qbj (module)
yatel.qbj.core (module)
yatel.qbj.functions (module)
yatel.qbj.schema (module)
yatel.qbj.shell (module)
yatel.server (module)
yatel.stats (module)
yatel.typeconv (module)
yatel.weight (module)
yatel.weight.core (module)
yatel.weight.euclidean (module)
yatel.weight.hamming (module)
yatel.weight.levenshtein (module)
yatel.yio (module)
yatel.yio.core (module)
yatel.yio.yjf (module)
yatel.yio.yxf (module)
YatelDOM (class in yatel.dom)
YatelHttpServer (class in yatel.server)
YatelNetwork (class in yatel.db)
YatelNetworkError
YF_STR_VERSION (in module yatel.yio.core)
YF_VERSION (in module yatel.yio.core)